Journal of Clinical Microbiology

View all JCM RSS

Re-evaluation of penicillin and ceftriaxone MIC results to predict susceptibility to the oral cephalosporin, cefpodoxime, in Streptococcus pneumoniae clinical isolates from the United States according to CLSI guidelines (2019–2021)
by Rodrigo E. MendesJessica V. PierceKelly WrightMichael D. HubandMariana Castanheira1Element Iowa City (JMI Laboratories)138461https://ror.org/02qv6pw23, North Liberty, Iowa, USA2Paratek Pharmaceuticalshttps://ror.org/019g7bh20, King of Prussia, Pennsylvania, USAJennifer Dien Bard on June 24, 2025 at 7:00 am
Performance and workflow comparison of the VITEK MS PRIME and Bruker Biotyper MALDI-TOF MS systems
by Rachel E. BossermanNicole J. TarltonKelly AlvaradoBrittany RoemmichMelanie L. Yarbrough1Department of Pathology and Immunology, Washington University School of Medicine12275https://ror.org/03x3g5467, St. Louis, Missouri, USAPatricia J. Simner on June 20, 2025 at 7:00 am
Advanced specificity and sensitivity studies relative to a research use only transcription-mediated amplification-based assay for Treponema pallidum RNA detection
by Trinity KruegerGrace KadonskyElizabeth ThelenAmanda ZappJosephine MooreAhmet MusluAllan PillayIrene A. StaffordErik Munson1Department of Medical Laboratory Science, Marquette University5505https://ror.org/04gr4te78, Milwaukee, Wisconsin, USA2Division of STD Prevention, Centers for Disease Control and Prevention1242https://ror.org/00qzjvm58, Atlanta, Georgia, USA3Department of Obstetrics and Gynecology, Division of Maternal Fetal Medicine, McGovern Medical School at UTHealth12339, Houston, Texas, USA4Wisconsin Clinical Laboratory Network Laboratory Technical Advisory Group, Madison, Wisconsin, USAErin McElvania on June 20, 2025 at 7:00 am
Detection of Mucorales antigen in bronchoalveolar lavage samples using a newly developed lateral-flow device
by Julie RousselotLaurence MillonEmeline SchererNathalie BourgeoisSebastien ImbertDamien DupontAnne DebourgogneDanièle MaubonAnne Pauline BellangerChristopher R. Thornton1Parasitology-Mycology Department, Besançon University Hospital547597, Besançon, France2CNRS, Chrono-environnement (UMR 6249), Université Marie et Louis Pasteur27000, Besançon, France3MiVEGEC, Parasitology-Mycology, CNRS, IRD, Montpellier University Hospital, University of Montpellier27037https://ror.org/051escj72, Montpellier, France4Parasitology-Mycology Department, Bordeaux University Hospital728253, Bordeaux, France5Institute of Infectious Agents, Parasitology and Medical Mycology Department, Hospices Civils de Lyon, Croix-Rousse Hospital684079, Lyon, France6Parasitology-Mycology Unit, Microbiology Department, Nancy Regional University Hospital-Hôpitaux de Brabois, Vandœuvre-Lès-Nancy, France7Parasitology-Mycology, Grenoble Alpes University Hospital36724https://ror.org/02rx3b187, Grenoble, France8Medical Research Council Centre for Medical Mycology, Faculty of Health and Life Sciences, University of Exeter3286https://ror.org/03yghzc09, Exeter, United KingdomTanis C. Dingle on June 18, 2025 at 7:00 am
Point-Counterpoint: Cascade reporting—useful tool to support antimicrobial stewardship, or dangerously misleading
by Joseph L. KutiJoseph D. LutgringPatricia J. SimnerSamia N. NaccacheEmily L. Heil 1 Center for Anti-Infective Research and Development, Hartford Hospital 23893 , Hartford, Connecticut, USA 2 Division of Healthcare Quality Promotion, Centers for Disease Control and Prevention 549360 , Atlanta, Georgia, USA 3 Department of Pathology, Division of Medical Microbiology, Johns Hopkins University School of Medicine 1500 , Baltimore, Maryland, USA 4 Department of Medicine, Division of Infectious Disease, Johns Hopkins University School of Medicine 1500 , Baltimore, Maryland, USA 5 LabCorp 364534 , Seattle, Washington, USA 6 Department of Practice, Sciences, and Health-Outcomes Research, University of Maryland Baltimore School of Pharmacy 15513 , Baltimore, Maryland, USA Romney M. Humphries on June 17, 2025 at 7:00 am
Accurate and reproducible whole-genome genotyping for bacterial genomic surveillance with Nanopore sequencing data
by K. PriorK. BeckerC. BrandtA. Cabal RoselJ. Dabernig-HeinzC. KohlerM. LohdeW. RuppitschF. SchulerG. E. WagnerA. Mellmann1Department of Periodontology and Operative Dentistry, University Hospital Münster39069https://ror.org/01856cw59, Münster, Germany2Friedrich Loeffler-Institute of Medical Microbiology, University Medicine Greifswald60634https://ror.org/025vngs54, Greifswald, Germany3Institute for Infectious Diseases and Infection Control, Jena University Hospital39065https://ror.org/035rzkx15, Jena, Germany4Institute for Surveillance and Infectious Disease Epidemiology, Austrian Agency for Health and Food Safety31190https://ror.org/055xb4311, Vienna, Austria5Diagnostic and Research Institute of Hygiene, Microbiology and Environmental Medicine, Medical University of Graz31475https://ror.org/02n0bts35, Graz, Austria6Institute of Medical Microbiology, University Hospital Münster39069https://ror.org/01856cw59, Münster, Germany7Institute of Hygiene, University Hospital Münster39069https://ror.org/01856cw59, Münster, GermanyDaniel J. Diekema on June 13, 2025 at 7:00 am
Automated identification of Salmonella serotype using MALDI-TOF mass spectrometry and machine learning techniques
by Jun RenJintao XiaMengyu ZhangChunhong LiuYuanyuan XuJianing WuYingzhu LiMingming ZhouShengjie LiWenjun Cao1Department of Clinical Laboratory, Eye & ENT Hospital, Fudan University12478https://ror.org/013q1eq08, Shanghai, China2Department of Clinical Laboratory, Children’s Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health26441, Hangzhou, Zhejiang, China3Department of Clinical Laboratory, Wanbei Coal Electric Group General Hospital645365, Suzhou, Anhui Province, ChinaErin McElvania on June 11, 2025 at 7:00 am
Mismatch-corrected CHIKV CDC Trioplex assay oligos restore sensitive pangenotype viral detection
by Lika Aminata DioufMignane NdiayeDiamilatou BaldeAgathe Shella EfireMoussa DiaFatou ThiamManfred WeidmannOumar FayeIdrissa Dieng1Virology Department, Institut Pasteur de Dakar89248https://ror.org/02ysgwq33, Dakar, Dakar Region, Senegal2Ecole Supérieure Polytechnique, Université Cheikh Anta Diop de Dakar89230, Dakar, Dakar Region, Senegal3Institute of Animal Hygiene and Veterinary Public Health University of Leipzig, Leipzig, Germany4Institute of Microbiology & Virology, Brandenburg Medical School Theodor Fontane477107, Neuruppin, Brandenburg, Germany5Animal Biology Department, Faculty of Sciences and Techniques, Cheikh Anta Diop University of Dakar89230https://ror.org/04je6yw13, Dakar, Dakar Region, SenegalMelissa B. Miller on June 11, 2025 at 7:00 am
The utility of syndromic respiratory pathogen panels: the premise of flexible and customizable approaches
by Julie M. NortonGaby DashlerEili KleinHeba H. Mostafa1Department of Pathology, Division of Medical Microbiology, Johns Hopkins School of Medicine1500, Baltimore, Maryland, USA2Department of Emergency Medicine, Johns Hopkins School of Medicine1500, Baltimore, Maryland, USA3Center for Disease Dynamics, Economics, and Policy439584https://ror.org/05fcqx592, Washington, DC, USARandall Hayden on June 10, 2025 at 7:00 am
Correction for Weyand et al., “Fatal interactions: pneumonia in bighorn lambs following experimental exposure to carriers of Mycoplasma ovipneumoniae”
by Logan K. WeyandBrandi L. FeltsE. Frances CassirerJonathan A. JenksDaniel P. WalshThomas E. Besser on June 10, 2025 at 7:00 am
Enhanced genomic surveillance of enteroviruses reveals a surge in enterovirus D68 cases, the Johns Hopkins health system, Maryland, 2024
by Amary FallJulie M. NortonOmar AbdullahAndrew PekoszEili KleinHeba H. Mostafa1Division of Medical Microbiology, Department of Pathology, Johns Hopkins School of Medicine1500, Baltimore, Maryland, USA2W. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins Bloomberg School of Public Health25802, Baltimore, Maryland, USA3Department of Emergency Medicine, Johns Hopkins School of Medicine1500, Baltimore, Maryland, USA4Center for Disease Dynamics Economics and Policy439584https://ror.org/05fcqx592, Washington, DC, USAMelissa B. Miller on June 10, 2025 at 7:00 am
Non-fungal pathogens detected by broad-range fungal polymerase chain reaction
by Sonya AhujaJoshua A. Lieberman1Department of Laboratory Medicine and Pathology, University of Washington School of Medicine189576https://ror.org/00cvxb145, Seattle, Washington, USATanis C. Dingle on June 10, 2025 at 7:00 am
An urgent need for diagnostic tools to address global mpox public health emergencies
by Benjamin M. LiuZhilong Yang1Division of Pathology and Laboratory Medicine, Children’s National Hospital, Washington, DC, USA2Department of Pathology, The George Washington University School of Medicine and Health Sciences43989https://ror.org/00y4zzh67, Washington, DC, USA3Department of Microbiology, Immunology and Tropical Medicine, The George Washington University School of Medicine and Health Sciences43989https://ror.org/00y4zzh67, Washington, DC, USA4Department of Veterinary Pathobiology, College of Veterinary Medicine & Biomedical Sciences, Texas A&M University14736https://ror.org/01f5ytq51, College Station, Texas, USARomney M. Humphries on June 5, 2025 at 7:00 am
Inter-laboratory variability in cytomegalovirus DNA quantification: implications for standardization and clinical monitoring
by D. BoutolleauA-S. L'HonneurR. GermiB. ChanzyC. Archimbaud-JallatC. RzadkowolskiJ. B. RaimbourgD. GauthierV. Thibault1AP-HP. Pitié-Salpêtrière Hospital, Virology Department, National Reference Centre for Herpesviruses (Associated Laboratory), Sorbonne Université27063https://ror.org/02en5vm52, Paris, France2INSERM, Pierre Louis Institute of Epidemiology and Public Health (IPLESP), UMR_S1136, Sorbonne University27063https://ror.org/02en5vm52, Paris, France3Department of Virology, Cochin Hospital and University of Paris Cité, AP-HPhttps://ror.org/01xx2ne27, Paris, France4Laboratoire de Virologie, CHU Grenoble, CNRS, CEA, IRIG IBS, University Grenoble Alpes27015https://ror.org/02rx3b187, Saint-Martin-d'Hères, Auvergne-Rhône-Alpes, France5CH Annecy Genevois55144, Épagny Metz-Tessy, Auvergne-Rhône-Alpes, France6Service de Virologie CHU Clermont-Ferrand, Centre National de Reference des Enterovirus et Parechovirus720123, Clermont-Ferrand, France7Bio-Rad Laboratories, Fort Worth, Texas, USA8Bio-Rad Laboratories, Marnes-La-Coquette, France9Bio-Rad Laboratories, Irvine, California, USA10CHU Rennes, Virologyhttps://ror.org/05qec5a53, Rennes, France11Univ Rennes, Inserm, EHESP, Irset (Institut de recherche en santé, environnement et travail) UMR_S 1085https://ror.org/015m7wh34, Rennes, FranceRandall Hayden on June 5, 2025 at 7:00 am
Performance of liquid Amies transport medium for the recovery of Salmonella and Shigella from stool compared to molecular testing
by Laura CollierMorgan A. Pence1Department of Pathology and Laboratory Medicine, Cook Children's Medical Center14488https://ror.org/009z5t729, Fort Worth, Texas, USAJennifer Dien Bard on June 4, 2025 at 7:00 am
The Staphylococcus aureus complex: implications for the clinical microbiology laboratory
by Austin YanJulianne V. KusNadia Sant1Department of Pathology and Laboratory Medicine, Faculty of Medicine, University of Ottawa153008, Ottawa, Ontario, Canada2Division of Microbiology, The Ottawa Hospitalhttps://ror.org/03c62dg59, Ottawa, Ontario, Canada3Public Health Ontario153300https://ror.org/025z8ah66, Toronto, Ontario, Canada4Department of Laboratory Medicine and Pathobiology, University of Toronto7938https://ror.org/03dbr7087, Toronto, Ontario, Canada5Eastern Ontario Regional Laboratory Association726218, Ottawa, Ontario, Canada6The Ottawa Hospital Research Institutehttps://ror.org/03c62dg59, Ottawa, Ontario, CanadaRomney M. Humphries on June 4, 2025 at 7:00 am
Improved HIV-1 RNA detection using whole blood versus plasma in antiretroviral-treated individuals
by Vivian I. Avelino-SilvaMars StoneLeilani MontalvoClara Di GermanioSonia BakkourMarion C. LanteriEduard GrebeBrian CusterXutao DengRenata BuccheriKaren HarringtonSteven H. KleinmanSandhya VasanNittaya PhanuphakCarlo SacdalanSiriwat AkapiratMark de SouzaEsper G. KallásSheila de Oliveira Garcia MateosEster C. SabinoPhilip J. NorrisMichael P. Busch1Vitalant Research Institute166672, San Francisco, California, USA2Department of Epidemiology and Biostatistics, University of California San Francisco8785https://ror.org/043mz5j54, San Francisco, California, USA3Faculdade de Medicina da Universidade de Sao Paulo117265https://ror.org/03se9eg94, São Paulo, State of São Paulo, Brazil4Department of Laboratory Medicine, University of California San Francisco8785https://ror.org/043mz5j54, San Francisco, California, USA5Creative Testing Solutions, Tempe, Arizona, USA6Hologic, Inc.315338, San Diego, California, USA7University of British Columbiahttps://ror.org/03rmrcq20, Victoria, British Columbia, Canada8U.S. Military HIV Research Program, Walter Reed Army Institute of Research8394https://ror.org/0145znz58, Silver Spring, Maryland, USA9Henry M. Jackson Foundation for the Advancement of Military Medicine, Inc., Bethesda, Maryland, USA10Institute of HIV Research and Innovation (IHRI)606508https://ror.org/04nqadf13, Bangkok, Thailand11SEARCH Research Foundation, Bangkok, Thailand12Research Affairs, Faculty of Medicine, Chulalongkorn University65103https://ror.org/028wp3y58, Bangkok, Thailand13Armed Forces Research Institute of Medical Sciences (AFRIMS)544411https://ror.org/023swxh49, Bangkok, Thailand14Instituto Butantan196591https://ror.org/01whwkf30, São Paulo, São Paulo, Brazil15Universidade Municipal de Sao Caetano do Sul119501https://ror.org/00gby0d64, São Caetano do Sul, São Paulo, Brazil16Department of Medicine, University of California San Francisco166668https://ror.org/043mz5j54, San Francisco, California, USARandall Hayden on June 4, 2025 at 7:00 am
Identification and quantification of gyrA variants in fluoroquinolone-resistant Mycobacterium tuberculosis in a MeltArray reaction
by Chunxia TuBiyi SuYunfan XiongZihan XiaChunlin XiangYaoju TanYe XuQingge Li1Engineering Research Centre of Molecular Diagnostics of the Ministry of Education, State Key Laboratory of Cellular Stress Biology, State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, School of Life Sciences, Faculty of Medicine and Life Sciences, Xiamen University599936, Xiamen, China2Guangzhou Chest Hospitalhttps://ror.org/04szr1369, Guangzhou, ChinaMelissa B. Miller on June 3, 2025 at 7:00 am
Performance evaluation of a commercial multiplex pathogen panel for the diagnosis of pediatric joint infections
by Lawson CopleyGina LeeMary VillaniNaureen TareenLaura M. Filkins1Department of Pediatric Orthopaedic Surgery, Children’s Medical Center of Dallas and University of Texas Southwestern Medical Center12334https://ror.org/05byvp690, Dallas, Texas, USA2Department of Pediatrics, Division of Infectious Diseases, University of Texas Southwestern Medical Center196285https://ror.org/05byvp690, Dallas, Texas, USA3Department of Pediatric Orthopaedic Surgery, Children’s Health System of Texas, Dallas, Texas, USA4Department of Pathology, University of Texas Southwestern Medical Center12334https://ror.org/05byvp690, Dallas, Texas, USADaniel D. Rhoads on June 2, 2025 at 7:00 am
Performance of the LIAISON PLEX yeast blood culture assay for identifying 16 invasive fungal pathogens in blood cultures
by Christopher L. EmeryNeelam DhimanSiu-Kei ChowGwyn PetersonPaul GranatoBrian BernierJanet Farhang1Indiana University Health22529https://ror.org/01kg8sb98, Indianapolis, Indiana, USA2Quest Diagnosticshttps://ror.org/010g9bb70, Lewisville, Texas, USA3MultiCare Health System14458https://ror.org/04g0bt697, Tacoma, Washington, USA4Laboratory Alliance of Central New York51972https://ror.org/02p30c858, Liverpool, New York, USA5Luminex Corporation17737, Austin, Texas, USATanis C. Dingle on June 2, 2025 at 7:00 am